Weighted CSI program - BMRB input

Explanation

Calculations are identical to that described for the original version.
 

Download

Sun/Solaris binary
Linux binary
(I was unable to compile for SGI using cc or gcc; contact me if you are interested in the source code) 

Example input

BMRB format, such as

         1    1   MET  HA    H    3.86  .  1
         2    1   MET  C     C  173.73  .  1
         3    1   MET  CA    C   55.1   .  1
         4    1   MET  CB    C   35.03  .  1
         5    3   GLU  HA    H    4.04  .  1
         6    3   GLU  HB2   H    2.08  .  1
         7    3   GLU  HB3   H    2.08  .  1
         8    3   GLU  HG2   H    2.46  .  1
         9    3   GLU  HG3   H    2.46  .  1
        10    3   GLU  H     H    8.93  .  1
        11    3   GLU  C     C  179.68  .  1
        12    3   GLU  CA    C   59.79  .  1
        13    3   GLU  CB    C   29.04  .  1
        14    3   GLU  CG    C   36.31  .  1
        15    3   GLU  N     N  120.4   .  1
        16    8   MET  HA    H    4.8   .  1
 

Executing the program

kyap[36] bmrb2csi.sol bmr4001.str s100b.csi -o

Default is reduced cysteines; remove the '-o' flag if this is the case.
 

Important notes

Reduced cysteines are the assumed default.

Residues/shifts missing from the BMRB file are acceptable.

Output filename is an argument for this program (contrary to the original version, which will output to screen unless you redirect with a ">").

The program will only analyse the first shift dataset in a BMRB file.

Please e-mail Kyoko if you have problems.